3D7F	Hydrolase	date	May 21, 2008
title	A High Resolution Crystal Structure Of Human Glutamate Carboxypeptidase II (Gcpii) In A Complex With Dcit, A Urea- Inhibitor
authors	J.Lubkowski, C.Barinka
compound		source
Molecule: Glutamate Carboxypeptidase 2 Chain: A Synonym: Glutamate Carboxypeptidase II, Membrane Glutamate Carboxypeptidase, Mgcp, N-Acetylated-Alpha-Linked Acidic Di I, Naaladase I, Pteroylpoly-Gamma-Glutamate Carboxypeptidas Folylpoly-Gamma-Glutamate Carboxypeptidase, Fgcp, Folate Hy Prostate-Specific Membrane Antigen, Psma, Psm; Ec: 3.4.17.21 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Gene: Folh1, Folh, Naalad1, Psm, Psma Expression_system: Drosophila Melanogaster Expression_system_cell_line: Schneider'S S2 Cells Expression_system_vector_type: Plasmid
symmetry	Space Group: I 2 2 2	R_factor 0.177 R_Free 0.195
crystal cell	length a length b length c angle alpha angle beta angle gamma 101.434 130.059 158.543 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.54 Å
ligand	BMA, CA, CL, MAN, NAG, YBY, ZN	enzyme	Hydrolase E.C.3.4.17.21 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Interactions between human glutamate carboxypeptidase II and urea-based inhibitors: structural characterization., Barinka C, Byun Y, Dusich CL, Banerjee SR, Chen Y, Castanares M, Kozikowski AP, Mease RC, Pomper MG, Lubkowski J, J Med Chem. 2008 Dec 25;51(24):7737-43. PMID:19053759

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (140 Kb) [Save to disk] Biological Unit Coordinates (3d7f.pdb1.gz) 262 Kb LPC: Ligand-Protein Contacts for 3D7F CSU: Contacts of Structural Units for 3D7F Likely Quarternary Molecular Structure file(s) for 3D7F Structure Factors (1163 Kb) Retrieve 3D7F in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3D7F from S2C, [Save to disk] Re-refined 3d7f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3D7F in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3D7F

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3D7F, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3d7f_A] [3d7f] SWISS-PROT database: [Q04609] Domain organization of [FOLH1_HUMAN] by SWISSPFAM

Other resources with information on 3D7F

Community annotation for 3D7F at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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