3D7W Hydrolase date May 22, 2008
title Mistletoe Lectin I In Complex With Zeatin
authors A.Meyer, W.Rypniewski, M.Szymanski, W.Voelter, J.Barciszewski, C.
compound source
Molecule: Beta-Galactoside-Specific Lectin 1
Chain: A
Fragment: Beta-Galactoside-Specific Lectin 1 Chain A Isofor
Synonym: Beta-Galactoside-Specific Lectin I, Viscumin
Ec: 3.2.2.22
Organism_scientific: Viscum Album
Organism_common: European Mistletoe
Organism_taxid: 3972
Other_details: Semiparasitic Plant

Molecule: Beta-Galactoside-Specific Lectin 1
Chain: B
Fragment: Beta-Galactoside-Specific Lectin 1 Chain B
Synonym: Beta-Galactoside-Specific Lectin I, Viscumin
Ec: 3.2.2.22

Organism_scientific: Viscum Album
Organism_common: European Mistletoe
Organism_taxid: 3972
Other_details: Semiparasitic Plant
symmetry Space Group: P 65 2 2
R_factor 0.182 R_Free 0.224
crystal
cell
length a length b length c angle alpha angle beta angle gamma
106.644 106.644 311.667 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.49 Å
ligand GOL, NAG, SO4, ZEA, ZEZ enzyme Hydrolase E.C.3.2.2.22 BRENDA
note 3D7W supersedes 3CEF
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceStructure of mistletoe lectin I from Viscum album in complex with the phytohormone zeatin., Meyer A, Rypniewski W, Szymanski M, Voelter W, Barciszewski J, Betzel C, Biochim Biophys Acta. 2008 Nov;1784(11):1590-5. Epub 2008 Jul 31. PMID:18718563
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk]
  • Biological Unit Coordinates (3d7w.pdb1.gz) 88 Kb
  • LPC: Ligand-Protein Contacts for 3D7W
  • CSU: Contacts of Structural Units for 3D7W
  • Likely Quarternary Molecular Structure file(s) for 3D7W
  • Structure Factors (289 Kb)
  • Retrieve 3D7W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3D7W from S2C, [Save to disk]
  • Re-refined 3d7w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3D7W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3D7W
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3D7W, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3d7w_A] [3d7w] [3d7w_B]
  • SWISS-PROT database: [P81446]
  • Domain organization of [ML1_VISAL] by SWISSPFAM
  • Domain found in 3D7W: [RICIN ] by SMART
  • Other resources with information on 3D7W
  • Community annotation for 3D7W at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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