3D7Z	Transferase	date	May 22, 2008
title	Crystal Structure Of P38 Kinase In Complex With A Biphenyl A Inhibitor
authors	D.O.Somers, S.Patel
compound		source
Molecule: Mitogen-Activated Protein Kinase 14 Chain: A Synonym: Mitogen-Activated Protein Kinase P38 Alpha, Map Ki Alpha, Cytokine Suppressive Anti-Inflammatory Drug-Binding Csaid-Binding Protein, Csbp, Max-Interacting Protein 2, Map Mxi2, Sapk2a; Ec: 2.7.11.24 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Mapk14, Csbp, Csbp1, Csbp2, Cspb1, Mxi2 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Brl Expression_system_vector_type: Plasmid Expression_system_plasmid: Prseta
symmetry	Space Group: P 21 21 21	R_factor 0.174 R_Free 0.227
crystal cell	length a length b length c angle alpha angle beta angle gamma 45.630 86.103 124.811 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	CSO, GK5, GOL, SO4 BindingDB	enzyme	Transferase E.C.2.7.11.24 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Biphenyl amide p38 kinase inhibitors 3: Improvement of cellular and in vivo activity., Angell R, Aston NM, Bamborough P, Buckton JB, Cockerill S, Deboeck SJ, Edwards CD, Holmes DS, Jones KL, Laine DI, Patel S, Smee PA, Smith KJ, Somers DO, Walker AL, Bioorg Med Chem Lett. 2008 Jun 18;. PMID:18614366

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (69 Kb) [Save to disk] Biological Unit Coordinates (3d7z.pdb1.gz) 64 Kb LPC: Ligand-Protein Contacts for 3D7Z CSU: Contacts of Structural Units for 3D7Z Likely Quarternary Molecular Structure file(s) for 3D7Z Structure Factors (222 Kb) Retrieve 3D7Z in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3D7Z from S2C, [Save to disk] Re-refined 3d7z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3D7Z in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3D7Z

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3D7Z, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3d7z_A] [3d7z] SWISS-PROT database: [Q16539] Domain organization of [MK14_HUMAN] by SWISSPFAM Domain found in 3D7Z: [S_TKc ] by SMART

Other resources with information on 3D7Z

Community annotation for 3D7Z at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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