3D8D	Protein Binding	date	May 23, 2008
title	Crystal Structure Of The Human Fe65-Ptb1 Domain
authors	J.Radzimanowski, S.Ravaud, I.Sinning, K.Wild
compound		source
Molecule: Amyloid Beta A4 Precursor Protein-Binding Family 1; Chain: A, B Fragment: Fe65-Ptb1 Domain Synonym: Fe65-Ptb1, Fe65 Protein Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Apbb1, Fe65, Rir Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet24d
symmetry	Space Group: P 21 21 21	R_factor 0.202 R_Free 0.252
crystal cell	length a length b length c angle alpha angle beta angle gamma 43.756 79.574 83.974 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	EDO, HG	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Crystal structure of the human Fe65-PTB1 domain., Radzimanowski J, Ravaud S, Schlesinger S, Koch J, Beyreuther K, Sinning I, Wild K, J Biol Chem. 2008 Aug 22;283(34):23113-20. Epub 2008 Jun 11. PMID:18550529

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk] Biological Unit Coordinates (3d8d.pdb1.gz) 24 Kb Biological Unit Coordinates (3d8d.pdb2.gz) 24 Kb Biological Unit Coordinates (3d8d.pdb3.gz) 47 Kb Biological Unit Coordinates (3d8d.pdb4.gz) 47 Kb Biological Unit Coordinates (3d8d.pdb5.gz) 46 Kb LPC: Ligand-Protein Contacts for 3D8D CSU: Contacts of Structural Units for 3D8D Likely Quarternary Molecular Structure file(s) for 3D8D Structure Factors (227 Kb) Retrieve 3D8D in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3D8D from S2C, [Save to disk] Re-refined 3d8d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3D8D in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3D8D

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3D8D, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3d8d_B] [3d8d] [3d8d_A] SWISS-PROT database: [O00213] Domain organization of [APBB1_HUMAN] by SWISSPFAM Domain found in 3D8D: [PTB ] by SMART

Other resources with information on 3D8D

Community annotation for 3D8D at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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