3D9V	Transferase	date	May 27, 2008
title	Crystal Structure Of Rock I Bound To H-1152p A Di-Methylated Of Fasudil
authors	M.Jacobs
compound		source
Molecule: Rho-Associated Protein Kinase 1 Chain: A, B Fragment: N-Terminal And Kinase Domain, Residues 6-415 Synonym: Rho-Associated, Coiled-Coil-Containing Protein Kin P160 Rock-1, P160rock, Renal Carcinoma Antigen Ny-Ren-35; Ec: 2.7.11.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rock1 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pbev10
symmetry	Space Group: P 31 2 1	R_factor 0.262 R_Free 0.280
crystal cell	length a length b length c angle alpha angle beta angle gamma 183.625 183.625 91.666 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	3.30 Å
ligand	H52 BindingDB	enzyme	Transferase E.C.2.7.11.1 BRENDA
note	3D9V supersedes 2ETO
Gene Ontology	Chain Function Process Component A, B
Primary reference	The structure of dimeric ROCK I reveals the mechanism for ligand selectivity., Jacobs M, Hayakawa K, Swenson L, Bellon S, Fleming M, Taslimi P, Doran J, J Biol Chem. 2006 Jan 6;281(1):260-8. Epub 2005 Oct 24. PMID:16249185

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (136 Kb) [Save to disk] Biological Unit Coordinates (3d9v.pdb1.gz) 130 Kb LPC: Ligand-Protein Contacts for 3D9V CSU: Contacts of Structural Units for 3D9V Likely Quarternary Molecular Structure file(s) for 3D9V Structure Factors (242 Kb) Retrieve 3D9V in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3D9V from S2C, [Save to disk] Re-refined 3d9v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3D9V in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3D9V

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3D9V, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3d9v] [3d9v_B] [3d9v_A] SWISS-PROT database: [Q13464] Domain organization of [ROCK1_HUMAN] by SWISSPFAM Domains found in 3D9V: [S_TK_X] [S_TKc ] by SMART

Other resources with information on 3D9V

Community annotation for 3D9V at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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