3DA6 Transferase date May 28, 2008
title Crystal Structure Of Human Jnk3 Complexed With N-(3-Methyl-4 (Methylamino)Pyrimidin-4-Yl)Pyridin-2-Yloxy)Naphthalen-1-Yl Benzo[D]Imidazol-2-Amine
authors V.J.Cee, A.C.Cheng, K.Romero, S.Bellon, C.Mohr, D.A.Whittington, J S.Caenepeel, A.Coxon, H.L.Deak, B.L.Hodous, J.L.Kim, J.Lin, H.Ngu P.R.Olivieri, V.F.Patel, L.Wang, P.Hughes, S.Geuns-Meyer
compound source
Molecule: Mitogen-Activated Protein Kinase 10
Chain: A
Fragment: Unp Residues 39-402
Synonym: Stress-Activated Protein Kinase Jnk3, C-Jun N-Term Kinase 3, Map Kinase P49 3f12;
Ec: 2.7.11.24
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mapk10, Jnk3, Jnk3a, Prkm10
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.256 R_Free 0.320
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.483 71.283 106.957 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand BZ9 enzyme Transferase E.C.2.7.11.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referencePyridyl-pyrimidine benzimidazole derivatives as potent, selective, and orally bioavailable inhibitors of Tie-2 kinase., Cee VJ, Cheng AC, Romero K, Bellon S, Mohr C, Whittington DA, Bak A, Bready J, Caenepeel S, Coxon A, Deak HL, Fretland J, Gu Y, Hodous BL, Huang X, Kim JL, Lin J, Long AM, Nguyen H, Olivieri PR, Patel VF, Wang L, Zhou Y, Hughes P, Geuns-Meyer S, Bioorg Med Chem Lett. 2008 Nov 20. PMID:19062275
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk]
  • Biological Unit Coordinates (3da6.pdb1.gz) 56 Kb
  • LPC: Ligand-Protein Contacts for 3DA6
  • CSU: Contacts of Structural Units for 3DA6
  • Likely Quarternary Molecular Structure file(s) for 3DA6
  • Structure Factors (400 Kb)
  • Retrieve 3DA6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DA6 from S2C, [Save to disk]
  • Re-refined 3da6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3DA6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3DA6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3DA6, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3da6] [3da6_A]
  • SWISS-PROT database: [P53779]
  • Domain organization of [MK10_HUMAN] by SWISSPFAM
  • Domain found in 3DA6: [S_TKc ] by SMART
  • Other resources with information on 3DA6
  • Community annotation for 3DA6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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