3DAE Transferase date May 29, 2008
title Crystal Structure Of Phosphorylated Snf1 Kinase Domain
authors L.S.Zheng, L.Chen, Z.H.Jiao, J.W.Wu
compound source
Molecule: Carbon Catabolite-Derepressing Protein Kinase
Chain: A, B
Fragment: Kinase Domain, Unp Residue 41-315
Synonym: Snf1
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Snf1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21b
symmetry Space Group: P 21 21 21
R_factor 0.227 R_Free 0.265
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.607 72.370 112.920 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand
enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural insight into the autoinhibition mechanism of AMP-activated protein kinase., Chen L, Jiao ZH, Zheng LS, Zhang YY, Xie ST, Wang ZX, Wu JW, Nature. 2009 May 27. PMID:19474788
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk]
  • Biological Unit Coordinates (3dae.pdb1.gz) 43 Kb
  • Biological Unit Coordinates (3dae.pdb2.gz) 42 Kb
  • Biological Unit Coordinates (3dae.pdb3.gz) 83 Kb
  • CSU: Contacts of Structural Units for 3DAE
  • Likely Quarternary Molecular Structure file(s) for 3DAE
  • Structure Factors (103 Kb)
  • Retrieve 3DAE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DAE from S2C, [Save to disk]
  • Re-refined 3dae structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3DAE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3DAE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3DAE, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3dae_B] [3dae] [3dae_A]
  • SWISS-PROT database: [P06782]
  • Domain organization of [SNF1_YEAST] by SWISSPFAM
  • Domain found in 3DAE: [S_TKc ] by SMART
  • Other resources with information on 3DAE
  • Community annotation for 3DAE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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