3DCN Hydrolase date Jun 04, 2008
title Glomerella Cingulata Apo Cutinase
authors M.P.Nyon, D.W.Rice, J.M.Berrisford, A.M.Hounslow, A.J.G.Moir, H.H S.Nathan, N.M.Mahadi, A.B.Farah Diba, C.J.Craven
compound source
Molecule: Cutinase
Chain: A
Fragment: Unp Residues 31-224
Synonym: Cutin Hydrolase
Ec: 3.1.1.74
Engineered: Yes
Organism_scientific: Glomerella Cingulata
Organism_common: Anthracnose Fungus
Organism_taxid: 5457
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Origami (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet32b_cuta
symmetry Space Group: P 41 21 2
R_factor 0.190 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.000 60.000 86.410 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand
enzyme Hydrolase E.C.3.1.1.74 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCatalysis by Glomerella cingulata Cutinase Requires Conformational Cycling between the Active and Inactive States of Its Catalytic Triad., Nyon MP, Rice DW, Berrisford JM, Hounslow AM, Moir AJ, Huang H, Nathan S, Mahadi NM, Bakar FD, Craven CJ, J Mol Biol. 2008 Oct 31. PMID:18983850
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk]
  • Biological Unit Coordinates (3dcn.pdb1.gz) 32 Kb
  • CSU: Contacts of Structural Units for 3DCN
  • Likely Quarternary Molecular Structure file(s) for 3DCN
  • Structure Factors (172 Kb)
  • Retrieve 3DCN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DCN from S2C, [Save to disk]
  • Re-refined 3dcn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3DCN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3DCN
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3DCN, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3dcn] [3dcn_A]
  • SWISS-PROT database: [P11373]
  • Domain organization of [CUTI1_COLGL] by SWISSPFAM
  • Domain found in 3DCN: [Cutinase ] by SMART
  • Other resources with information on 3DCN
  • Community annotation for 3DCN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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