3DCT	Transcription Transcription Activator	date	Jun 04, 2008
title	Fxr With Src1 And Gw4064
authors	S.P.Williams, K.P.Madauss
compound		source
Molecule: Bile Acid Receptor Chain: A Fragment: Ligand Binding Domain, Unp Residues 258-486 Synonym: Farnesoid X-Activated Receptor, Farnesol Receptor Nuclear Receptor Subfamily 1 Group H Member 4, Retinoid X R Interacting Protein 14, Rxr-Interacting Protein 14; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Nr1h4, Bar, Fxr, Hrr1, Rip14 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Prseta
Molecule: Nuclear Receptor Coactivator 1 Chain: B Fragment: Unp Residues 741-761 Synonym: Steroid Receptor Coactivator 1, Src-1 Ec: 2.3.1.48 Engineered: Yes		Synthetic: Yes Other_details: Synthetic
symmetry	Space Group: F 2 3	R_factor 0.230 R_Free 0.240
crystal cell	length a length b length c angle alpha angle beta angle gamma 159.449 159.449 159.449 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	064 BindingDB	enzyme	Transferase E.C.2.3.1.48 BRENDA
Primary reference	Conformationally constrained farnesoid X receptor (FXR) agonists: Naphthoic acid-based analogs of GW 4064., Akwabi-Ameyaw A, Bass JY, Caldwell RD, Caravella JA, Chen L, Creech KL, Deaton DN, Jones SA, Kaldor I, Liu Y, Madauss KP, Marr HB, McFadyen RB, Miller AB, Iii FN, Parks DJ, Spearing PK, Todd D, Williams SP, Wisely GB, Bioorg Med Chem Lett. 2008 Aug 1;18(15):4339-43. Epub 2008 Jun 28. PMID:18621523

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk] Biological Unit Coordinates (3dct.pdb1.gz) 39 Kb LPC: Ligand-Protein Contacts for 3DCT CSU: Contacts of Structural Units for 3DCT Likely Quarternary Molecular Structure file(s) for 3DCT Structure Factors (102 Kb) Retrieve 3DCT in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3DCT from S2C, [Save to disk] Re-refined 3dct structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3DCT in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3DCT

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3DCT, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3dct_B] [3dct_A] [3dct] SWISS-PROT database: [Q15788] [Q96RI1] Domain organization of [NCOA1_HUMAN] [NR1H4_HUMAN] by SWISSPFAM Domain found in 3DCT: [HOLI ] by SMART

Other resources with information on 3DCT

Community annotation for 3DCT at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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