3DDC	Hydrolase Apoptosis	date	Jun 05, 2008
title	Crystal Structure Of Nore1a In Complex With Ras
authors	B.Stieglitz, C.Bee, D.Schwarz, O.Yildiz, A.Moshnikova, A.Khokhlat C.Herrmann
compound		source
Molecule: Gtpase Hras Chain: A Fragment: Unp Residues 1-166 Synonym: Transforming Protein P21, P21ras, H-Ras-1, C-H-Ras Ec: 3.6.5.2 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hras, Hras1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Ck600k Expression_system_vector_type: Plasmid Expression_system_plasmid: Ptac
Molecule: Ras Association Domain-Containing Family Protein Chain: B Fragment: Ras Binding Domain, Unp Residues 200-358 Synonym: New Ras Effector 1, Regulator For Cell Adhesion An Polarization Enriched In Lymphoid Tissues, Rapl, Effector P Nore1a; Engineered: Yes Mutation: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: Rassf5, Nore1, Rapl Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex4t1
symmetry	Space Group: C 1 2 1	R_factor 0.193 R_Free 0.230
crystal cell	length a length b length c angle alpha angle beta angle gamma 79.600 88.000 56.500 90.00 125.00 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	GNP, MG	enzyme	Hydrolase E.C.3.6.5.2 BRENDA
note	3DDC is a representative structure
Gene Ontology	Chain Function Process Component A B
Primary reference	Novel type of Ras effector interaction established between tumour suppressor NORE1A and Ras switch II., Stieglitz B, Bee C, Schwarz D, Yildiz O, Moshnikova A, Khokhlatchev A, Herrmann C, EMBO J. 2008 Jul 3;. PMID:18596699

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk] Biological Unit Coordinates (3ddc.pdb1.gz) 100 Kb Biological Unit Coordinates (3ddc.pdb2.gz) 51 Kb LPC: Ligand-Protein Contacts for 3DDC CSU: Contacts of Structural Units for 3DDC Likely Quarternary Molecular Structure file(s) for 3DDC Structure Factors (245 Kb) Retrieve 3DDC in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3DDC from S2C, [Save to disk] Re-refined 3ddc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3DDC in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3DDC

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3DDC, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3ddc_A] [3ddc] [3ddc_B] SWISS-PROT database: [Q5EBH1] [P01112] Domain organization of [RASF5_MOUSE] [RASH_HUMAN] by SWISSPFAM Domains found in 3DDC: [RA] [RAS ] by SMART

Other resources with information on 3DDC

Community annotation for 3DDC at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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