3DEW Transcription Regulator date Jun 10, 2008
title The Structure Of A Putative Tetr Family Transcriptional Regu Geobacter Sulfurreducens Pca.
authors M.E.Cuff, L.Bigelow, J.Abdullah, A.Joachimiak, Midwest Center Fo Structural Genomics (Mcsg)
compound source
Molecule: Transcriptional Regulator, Tetr Family
Chain: A
Engineered: Yes
Organism_scientific: Geobacter Sulfurreducens
Organism_taxid: 35554
Strain: Pca
Gene: Gsu0175
Expression_system: Escherichia Coli
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg7
symmetry Space Group: P 32 2 1
R_factor 0.171 R_Free 0.210
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.106 63.106 76.550 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.75 Å
ligand ACY, BME, CL, EDO, MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (3dew.pdb1.gz) 75 Kb
  • LPC: Ligand-Protein Contacts for 3DEW
  • CSU: Contacts of Structural Units for 3DEW
  • Likely Quarternary Molecular Structure file(s) for 3DEW
  • Structure Factors (571 Kb)
  • Retrieve 3DEW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DEW from S2C, [Save to disk]
  • Re-refined 3dew structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3DEW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3DEW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3DEW, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3dew] [3dew_A]
  • SWISS-PROT database: [Q74GS0]
  • Domain organization of [Q74GS0_GEOSL] by SWISSPFAM
  • Other resources with information on 3DEW
  • Community annotation for 3DEW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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