3DF8 Transcription date Jun 11, 2008
title The Crystal Structure Of A Possible Hxlr Family Transcriptio From Thermoplasma Volcanium Gss1
authors K.Tan, C.Tesar, S.Moy, A.Joachimiak, Midwest Center For Structur Genomics (Mcsg)
compound source
Molecule: Possible Hxlr Family Transcriptional Factor
Chain: A
Engineered: Yes
Organism_scientific: Thermoplasma Volcanium
Organism_taxid: 50339
Strain: Gss1
Gene: Tv1295, Tvg1336486
Expression_system: Escherichia Coli
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg7
symmetry Space Group: C 1 2 1
R_factor 0.171 R_Free 0.211
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.739 54.755 40.687 90.00 125.31 90.00
method X-Ray Diffractionresolution 1.65 Å
ligand ACT, MSE enzyme
note 3DF8 is a representative structure
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (26 Kb) [Save to disk]
  • Biological Unit Coordinates (3df8.pdb1.gz) 40 Kb
  • LPC: Ligand-Protein Contacts for 3DF8
  • CSU: Contacts of Structural Units for 3DF8
  • Likely Quarternary Molecular Structure file(s) for 3DF8
  • Structure Factors (201 Kb)
  • Retrieve 3DF8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DF8 from S2C, [Save to disk]
  • Re-refined 3df8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3DF8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3DF8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3DF8, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3df8] [3df8_A]
  • SWISS-PROT database: [Q978X0]
  • Domain organization of [Q978X0_THEVO] by SWISSPFAM
  • Other resources with information on 3DF8
  • Community annotation for 3DF8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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