3DFA Transferase date Jun 11, 2008
title Crystal Structure Of Kinase Domain Of Calcium-Dependent Prot Cgd3_920 From Cryptosporidium Parvum
authors A.K.Wernimont, J.Lew, Y.H.Lin, A.Hassanali, C.Khuu, Z.Alam, I.Kozi D.Cossar, A.Bochkarev, C.H.Arrowsmith, C.Bountra, M.Wilkstrom, A.M.Edwards, R.Hui, J.D.Artz, T.Xiao, Structural Genomics Conso (Sgc)
compound source
Molecule: Calcium-Dependent Protein Kinase Cgd3_920
Chain: A
Fragment: Kinase Domain: Residues 70-338
Engineered: Yes
Organism_scientific: Cryptosporidium Parvum
Organism_taxid: 353152
Strain: Iowa II
Gene: Cgd3_920
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
symmetry Space Group: P 43 21 2
R_factor 0.233 R_Free 0.263
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.447 69.447 137.414 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.45 Å
Gene CGD3
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (3dfa.pdb1.gz) 42 Kb
  • CSU: Contacts of Structural Units for 3DFA
  • Likely Quarternary Molecular Structure file(s) for 3DFA
  • Structure Factors (272 Kb)
  • Retrieve 3DFA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DFA from S2C, [Save to disk]
  • Re-refined 3dfa structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3DFA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3DFA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3DFA, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3dfa_A] [3dfa]
  • SWISS-PROT database: [A3FQ16]
  • Domain organization of [A3FQ16_CRYPV] by SWISSPFAM
  • Domain found in 3DFA: [S_TKc ] by SMART
  • Other resources with information on 3DFA
  • Community annotation for 3DFA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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