3DGI Oxidoreductase date Jun 13, 2008
title Crystal Structure Of F87at268a Mutant Of Cyp Bm3
authors I.Le Trong, J.H.Katayama, R.A.Totah, R.E.Stenkamp, E.P.Fox
compound source
Molecule: Bifunctional P-450nadph-P450 Reductase
Chain: A, B
Fragment: Cytochrome P450 102, Heme Domain: Residues 2-456
Synonym: Cytochrome P450(Bm-3), P450bm-3 [Full Length Prote
Includes: Cytochrome P450 102 (Ec 1.14.14.1) And Nadph-Cyto P450 Reductase (Ec 1.6.2.4)];
Ec: 1.14.14.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Bacillus Megaterium
Organism_taxid: 1404
Gene: Cyp102a1, Cyp102
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Dh5alpha
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21d
symmetry Space Group: P 1 21 1
R_factor 0.177 R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.934 146.625 63.515 90.00 97.36 90.00
method X-Ray Diffractionresolution 1.95 Å
ligand DMS, HEM enzyme Oxidoreductase E.C.1.14.14.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (159 Kb) [Save to disk]
  • Biological Unit Coordinates (3dgi.pdb1.gz) 80 Kb
  • Biological Unit Coordinates (3dgi.pdb2.gz) 76 Kb
  • LPC: Ligand-Protein Contacts for 3DGI
  • CSU: Contacts of Structural Units for 3DGI
  • Likely Quarternary Molecular Structure file(s) for 3DGI
  • Structure Factors (1101 Kb)
  • Retrieve 3DGI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DGI from S2C, [Save to disk]
  • Re-refined 3dgi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3DGI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3DGI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3DGI, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3dgi_B] [3dgi] [3dgi_A]
  • SWISS-PROT database: [P14779]
  • Domain organization of [CPXB_BACME] by SWISSPFAM
  • Other resources with information on 3DGI
  • Community annotation for 3DGI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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