3DIK Viral Protein date Jun 20, 2008
title Pseudo-Atomic Model Of The Hiv-1 Ca Hexameric Lattice
authors B.K.Ganser-Pornillos, A.Cheng, M.Yeager
compound source
Molecule: Capsid Protein P24
Chain: A
Engineered: Yes
 Organism_scientific: Human Immunodeficiency Virus Type 1
Organism_taxid: 11698
Gene: Gag-Pol
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11a
symmetry Space Group: P 6
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
92.700 92.700 110.000 90.00 90.00 120.00
method Electron Crystallographyresolution 9.00 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of full-length HIV-1 CA: a model for the mature capsid lattice., Ganser-Pornillos BK, Cheng A, Yeager M, Cell. 2007 Oct 5;131(1):70-9. PMID:17923088
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (7 Kb) [Save to disk]
  • Biological Unit Coordinates (3dik.pdb1.gz) 5 Kb
  • CSU: Contacts of Structural Units for 3DIK
  • Likely Quarternary Molecular Structure file(s) for 3DIK
  • Structure Factors (2 Kb)
  • Retrieve 3DIK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DIK from S2C, [Save to disk]
    • View 3DIK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3DIK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3DIK, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3dik_A] [3dik]
  • SWISS-PROT database: [P12497]
  • Domain organization of [POL_HV1N5] by SWISSPFAM
    • Other resources with information on 3DIK
  • Community annotation for 3DIK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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