3DJ8	Hydrolase	date	Jun 22, 2008
title	Synthesis Of (2s)-2-Amino-7,8-Epoxyoctanoic Acid And Structu Metal-Bridging Complex With Human Arginase I
authors	L.Di Costanzo, D.W.Christianson
compound		source
Molecule: Arginase-1 Chain: A, B Synonym: Type I Arginase, Liver-Type Arginase Ec: 3.5.3.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet11-D
symmetry	Space Group: P 3	R_factor 0.152 R_Free 0.193
crystal cell	length a length b length c angle alpha angle beta angle gamma 90.623 90.623 69.560 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.51 Å
ligand	EXY, MN	enzyme	Hydrolase E.C.3.5.3.1 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Synthesis of (2S)-2-amino-7,8-epoxyoctanoic acid and structure of its metal-bridging complex with human arginase I., Zakharian TY, Di Costanzo L, Christianson DW, Org Biomol Chem. 2008 Sep 21;6(18):3240-3. Epub 2008 Aug 6. PMID:18802628

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (106 Kb) [Save to disk] Biological Unit Coordinates (3dj8.pdb1.gz) 151 Kb Biological Unit Coordinates (3dj8.pdb2.gz) 149 Kb LPC: Ligand-Protein Contacts for 3DJ8 CSU: Contacts of Structural Units for 3DJ8 Likely Quarternary Molecular Structure file(s) for 3DJ8 Structure Factors (713 Kb) Retrieve 3DJ8 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3DJ8 from S2C, [Save to disk] Re-refined 3dj8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3DJ8 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3DJ8

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3DJ8, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3dj8] [3dj8_B] [3dj8_A] SWISS-PROT database: [P05089] Domain organization of [ARGI1_HUMAN] by SWISSPFAM

Other resources with information on 3DJ8

Community annotation for 3DJ8 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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