3DKT	Structural Protein Virus Like Particle	date	Jun 26, 2008
title	Crystal Structure Of Thermotoga Maritima Encapsulin
authors	M.Sutter, D.Boehringer, S.Gutmann, E.Weber-Ban, N.Ban
compound		source
Molecule: Maritimacin Chain: A, B, C, D, E, F, G, H, I, J Synonym: Thermotoga Bacteriocin Ec: 3.4.-.-		Organism_scientific: Thermotoga Maritima Organism_taxid: 2336 Strain: Msb8, Dsm3109
Molecule: Putative Uncharacterized Protein Chain: K, L, M, N, O, P, Q, R, S, T Fragment: C-Terminal Encapsulin Binding Peptide, Unp Residu 113'; Synonym: Ferritin-Like Protein		Organism_scientific: Thermotoga Maritima Organism_taxid: 2336 Strain: Msb8, Dsm3109
symmetry	Space Group: F 41 3 2	R_factor 0.219 R_Free 0.239
crystal cell	length a length b length c angle alpha angle beta angle gamma 669.040 669.040 669.040 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.10 Å
ligand		enzyme	Hydrolase E.C.3.4 BRENDA
note	3DKT (Molecule of the Month:pdb114)
Gene Ontology	Chain Function Process Component F, A, J, E, B, H, C, D, I, G
Primary reference	Structural basis of enzyme encapsulation into a bacterial nanocompartment., Sutter M, Boehringer D, Gutmann S, Gunther S, Prangishvili D, Loessner MJ, Stetter KO, Weber-Ban E, Ban N, Nat Struct Mol Biol. 2008 Sep;15(9):939-47. PMID:19172747

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (452 Kb) [Save to disk] Biological Unit Coordinates (3dkt.pdb1.gz) 2637 Kb CSU: Contacts of Structural Units for 3DKT Likely Quarternary Molecular Structure file(s) for 3DKT Structure Factors (2028 Kb) Retrieve 3DKT in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3DKT from S2C, [Save to disk] Re-refined 3dkt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3DKT in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3DKT

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3DKT, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3dkt_S] [3dkt_H] [3dkt_C] [3dkt_K] [3dkt_T] [3dkt] [3dkt_M] [3dkt_G] [3dkt_A] [3dkt_E] [3dkt_N] [3dkt_P] [3dkt_O] [3dkt_I] [3dkt_F] [3dkt_J] [3dkt_L] [3dkt_B] [3dkt_Q] [3dkt_R] [3dkt_D] SWISS-PROT database: [Q9WZP2] [Q9WZP3] Domain organization of [MARIT_THEMA] [Q9WZP3_THEMA] by SWISSPFAM

Other resources with information on 3DKT

Community annotation for 3DKT at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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