3DNJ	Peptide Binding Protein	date	Jul 02, 2008
title	The Structure Of The Caulobacter Crescentus Clps Protease Ad Protein In Complex With A N-End Rule Peptide
authors	K.Wang, G.Roman-Hernandez, R.A.Grant, R.T.Sauer, T.A.Baker
compound		source
Molecule: Atp-Dependent Clp Protease Adapter Protein Clps Chain: A, B Engineered: Yes		Organism_scientific: Caulobacter Vibrioides Organism_common: Caulobacter Vibrioides Organism_taxid: 155892 Strain: Cb15 Gene: Clps, Cc_2467 Expression_system: Escherichia Coli Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet23b
Molecule: Synthetic N-End Rule Peptide Chain: C, D Engineered: Yes		Synthetic: Yes Other_details: The Peptide Is Chemically Synthesized
symmetry	Space Group: P 1 21 1	R_factor 0.135 R_Free 0.159
crystal cell	length a length b length c angle alpha angle beta angle gamma 33.693 53.974 44.824 90.00 110.39 90.00
method	X-Ray Diffraction	resolution	1.15 Å
ligand	MG	enzyme
note	3DNJ is a representative structure
Gene	CC
Gene Ontology	Chain Function Process Component A, B
Primary reference	The molecular basis of N-end rule recognition., Wang KH, Roman-Hernandez G, Grant RA, Sauer RT, Baker TA, Mol Cell. 2008 Nov 7;32(3):406-14. PMID:18995838

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (98 Kb) [Save to disk] Biological Unit Coordinates (3dnj.pdb1.gz) 48 Kb Biological Unit Coordinates (3dnj.pdb2.gz) 47 Kb LPC: Ligand-Protein Contacts for 3DNJ CSU: Contacts of Structural Units for 3DNJ Likely Quarternary Molecular Structure file(s) for 3DNJ Structure Factors (364 Kb) Retrieve 3DNJ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3DNJ from S2C, [Save to disk] Re-refined 3dnj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3DNJ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3DNJ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3DNJ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3dnj] [3dnj_C] [3dnj_A] [3dnj_B] [3dnj_D] SWISS-PROT database: [Q9A5I0] Domain organization of [CLPS_CAUCR] by SWISSPFAM

Other resources with information on 3DNJ

Community annotation for 3DNJ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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