3DOM	Transcription	date	Jul 04, 2008
title	Crystal Structure Of The Complex Between Tfb5 And The C-Term Domain Of Tfb2
authors	D.E.Kainov, J.Cavarelli, J.M.Egly, A.Poterszman
compound		source
Molecule: Rna Polymerase II Transcription Factor B Subunit Chain: A, C Fragment: C-Terminal Domain Synonym: Tfiih Subunit Tfb2, Rna Polymerase II Transcriptio P52 Subunit, Rna Polymerase II Transcription Factor B 52 Kd General Transcription And Dna Repair Factor Iih Subunit Tfb Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Yeast Organism_taxid: 4932 Gene: Tfb2 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pskb2
Molecule: Rna Polymerase II Transcription Factor B Subunit Chain: B, D Synonym: Tfiih Subunit Tfb5, General Transcription And Dna Factor Iih Subunit Tfb5; Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Yeast Organism_taxid: 4932 Gene: Tfb5 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pskb2
symmetry	Space Group: P 21 21 21	R_factor 0.202 R_Free 0.261
crystal cell	length a length b length c angle alpha angle beta angle gamma 37.583 103.593 114.345 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.60 Å
Gene Ontology	Chain Function Process Component A, C D, B holo TFIIH complex
Primary reference	Structural basis for group A trichothiodystrophy., Kainov DE, Vitorino M, Cavarelli J, Poterszman A, Egly JM, Nat Struct Mol Biol. 2008 Sep;15(9):980-4. PMID:19172752

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk] Biological Unit Coordinates (3dom.pdb1.gz) 23 Kb Biological Unit Coordinates (3dom.pdb2.gz) 24 Kb CSU: Contacts of Structural Units for 3DOM Likely Quarternary Molecular Structure file(s) for 3DOM Structure Factors (101 Kb) Retrieve 3DOM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3DOM from S2C, [Save to disk] Re-refined 3dom structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3DOM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3DOM

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3DOM, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3dom_C] [3dom_D] [3dom_A] [3dom_B] [3dom] SWISS-PROT database: [Q02939] [Q3E7C1] Domain organization of [TFB2_YEAST] [TFB5_YEAST] by SWISSPFAM Domain found in 3DOM: [Tbf5 ] by SMART

Other resources with information on 3DOM

Community annotation for 3DOM at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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