3DOU Transferase date Jul 06, 2008
title Crystal Structure Of Methyltransferase Involved In Cell Divi Thermoplasma Volcanicum Gss1
authors Y.Patskovsky, S.Ozyurt, M.Dickey, S.Hu, K.Bain, S.Wasserman, J.M.S S.K.Burley, S.C.Almo, New York Sgx Research Center For Struct Genomics (Nysgxrc)
compound source
Molecule: Ribosomal Rna Large Subunit Methyltransferase J
Chain: A
Fragment: C Terminal Segment, Residues 17-196
Synonym: Rrna (Uridine-2'-O-)-Methyltransferase, 23s Rrna M Methyltransferase;
Ec: 2.1.1.-
Engineered: Yes
Organism_scientific: Thermoplasma Volcanium
Organism_taxid: 50339
Strain: Gss1
Gene: Rrmj, Tv0292, Tvg0303954
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.166 R_Free 0.195
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.620 50.053 56.457 90.00 108.08 90.00
method X-Ray Diffractionresolution 1.45 Å
ligand MSE, SAM enzyme Transferase E.C.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • rRNA (uridine-2'-O-)-methylt...


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk]
  • Biological Unit Coordinates (3dou.pdb1.gz) 33 Kb
  • LPC: Ligand-Protein Contacts for 3DOU
  • CSU: Contacts of Structural Units for 3DOU
  • Likely Quarternary Molecular Structure file(s) for 3DOU
  • Structure Factors (583 Kb)
  • Retrieve 3DOU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DOU from S2C, [Save to disk]
  • Re-refined 3dou structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3DOU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3DOU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3DOU, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3dou_A] [3dou]
  • SWISS-PROT database: [Q97C13]
  • Domain organization of [RLME_THEVO] by SWISSPFAM
  • Other resources with information on 3DOU
  • Community annotation for 3DOU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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