3DPU	Signaling Protein	date	Jul 09, 2008
title	Roccor Domain Tandem Of Rab Family Protein (Roco)
authors	K.Gotthardt, M.Weyand, A.Kortholt, P.J.M.Van Haastert, A.Witting
compound		source
Molecule: Rab Family Protein Chain: A, B Fragment: Roccor, Unp Residues 412-946 Engineered: Yes Mutation: Yes		Organism_scientific: Chlorobaculum Tepidum Organism_taxid: 1097 Strain: Chlorobium Tepidum Tls Gene: Ct1526 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 De3 C+ Expression_system_vector_type: Plasmid Expression_system_plasmid: Pproex Htb
symmetry	Space Group: P 21 21 21	R_factor 0.230 R_Free 0.270
crystal cell	length a length b length c angle alpha angle beta angle gamma 83.200 106.100 139.000 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.90 Å
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structure of the Roc-COR domain tandem of C. tepidum, a prokaryotic homologue of the human LRRK2 Parkinson kinase., Gotthardt K, Weyand M, Kortholt A, Van Haastert PJ, Wittinghofer A, EMBO J. 2008 Jul 24. PMID:18650931

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (130 Kb) [Save to disk] Biological Unit Coordinates (3dpu.pdb1.gz) 122 Kb CSU: Contacts of Structural Units for 3DPU Likely Quarternary Molecular Structure file(s) for 3DPU Structure Factors (219 Kb) Retrieve 3DPU in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3DPU from S2C, [Save to disk] Re-refined 3dpu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3DPU in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3DPU

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3DPU, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3dpu] [3dpu_B] [3dpu_A] SWISS-PROT database: [Q8KC98] Domain organization of [Q8KC98_CHLTE] by SWISSPFAM Domain found in 3DPU: [small_GTPase ] by SMART

Other resources with information on 3DPU

Community annotation for 3DPU at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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