3DS5 Viral Protein date Jul 11, 2008
title Hiv-1 Capsid C-Terminal Domain Mutant (N183a)
authors S.Igonet, M.C.Vaney, F.A.Rey
compound source
Molecule: Hiv-1 Capsid Protein
Chain: A, B, C, D
Fragment: C-Terminal Domain, Unp Residues 278-363
Engineered: Yes
Mutation: Yes
Organism_scientific: Human Immunodeficiency Virus 1
Organism_common: Hiv-1
Organism_taxid: 11698
Strain: Nl4-3
Gene: Gag
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3) Codonplus-Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11c
symmetry Space Group: P 1
R_factor 0.220 R_Free 0.270
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.359 51.321 51.358 109.20 109.63 109.55
method X-Ray Diffractionresolution 2.40 Å
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceResidues in the HIV-1 Capsid Assembly Inhibitor Binding Site Are Essential for Maintaining the Assembly-competent Quaternary Structure of the Capsid Protein., Bartonova V, Igonet S, Sticht J, Glass B, Habermann A, Vaney MC, Sehr P, Lewis J, Rey FA, Krausslich HG, J Biol Chem. 2008 Nov 14;283(46):32024-33. Epub 2008 Sep 4. PMID:18772135
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (3ds5.pdb1.gz) 24 Kb
  • Biological Unit Coordinates (3ds5.pdb2.gz) 23 Kb
  • CSU: Contacts of Structural Units for 3DS5
  • Likely Quarternary Molecular Structure file(s) for 3DS5
  • Structure Factors (99 Kb)
  • Retrieve 3DS5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DS5 from S2C, [Save to disk]
  • Re-refined 3ds5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3DS5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3DS5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3DS5, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ds5_A] [3ds5_D] [3ds5] [3ds5_B] [3ds5_C]
  • SWISS-PROT database: [P12497]
  • Domain organization of [POL_HV1N5] by SWISSPFAM
  • Other resources with information on 3DS5
  • Community annotation for 3DS5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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