3DS6 Transferase date Jul 11, 2008
title P38 Complex With A Phthalazine Inhibitor
authors B.Herberich, R.Syed, V.Li, D.Grosfeld
compound source
Molecule: Mitogen-Activated Protein Kinase 14
Chain: A, B, C, D
Fragment: Human P38 Kinase
Synonym: Mitogen-Activated Protein Kinase P38 Alpha, Map Ki Alpha, Cytokine Suppressive Anti-Inflammatory Drug-Binding Csaid-Binding Protein, Csbp, Max-Interacting Protein 2, Map Mxi2, Sapk2a;
Ec: 2.7.11.24
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mapk14, Csbp, Csbp1, Csbp2, Cspb1, Mxi2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.228 R_Free 0.319
crystal
cell
length a length b length c angle alpha angle beta angle gamma
78.950 87.884 224.939 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand A17 BindingDB enzyme Transferase E.C.2.7.11.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceDiscovery of Highly Selective and Potent p38 Inhibitors Based on a Phthalazine Scaffold., Herberich B, Cao GQ, Chakrabarti PP, Falsey JR, Pettus L, Rzasa RM, Reed AB, Reichelt A, Sham K, Thaman M, Wurz RP, Xu S, Zhang D, Hsieh F, Lee MR, Syed R, Li V, Grosfeld D, Plant MH, Henkle B, Sherman L, Middleton S, Wong LM, Tasker AS, J Med Chem. 2008 Sep 26. PMID:18817365
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (233 Kb) [Save to disk]
  • Biological Unit Coordinates (3ds6.pdb1.gz) 59 Kb
  • Biological Unit Coordinates (3ds6.pdb2.gz) 59 Kb
  • Biological Unit Coordinates (3ds6.pdb3.gz) 60 Kb
  • Biological Unit Coordinates (3ds6.pdb4.gz) 60 Kb
  • LPC: Ligand-Protein Contacts for 3DS6
  • CSU: Contacts of Structural Units for 3DS6
  • Likely Quarternary Molecular Structure file(s) for 3DS6
  • Structure Factors (330 Kb)
  • Retrieve 3DS6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DS6 from S2C, [Save to disk]
  • Re-refined 3ds6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3DS6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3DS6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3DS6, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ds6_B] [3ds6_D] [3ds6_A] [3ds6_C] [3ds6]
  • SWISS-PROT database: [Q16539]
  • Domain organization of [MK14_HUMAN] by SWISSPFAM
  • Domain found in 3DS6: [S_TKc ] by SMART
  • Other resources with information on 3DS6
  • Community annotation for 3DS6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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