3DTC	Transferase	date	Jul 14, 2008
title	Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed Wit 16
authors	A.A.Fedorov, E.V.Fedorov, S.L.Meyer, R.L.Hudkins, S.C.Almo
compound		source
Molecule: Mitogen-Activated Protein Kinase Kinase Kinase 9 Chain: A Synonym: Mixed Lineage Kinase 1 Ec: 2.7.11.25 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Map3k9, Mlk1, Prke1 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 2	R_factor 0.218 R_Free 0.282
crystal cell	length a length b length c angle alpha angle beta angle gamma 56.930 126.304 41.359 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.60 Å
ligand	SO4, VIN	enzyme	Transferase E.C.2.7.11.25 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Mixed-lineage kinase 1 and mixed-lineage kinase 3 subtype-selective dihydronaphthyl[3,4-a]pyrrolo[3,4-c]carbazole-5-ones: optimization, mixed-lineage kinase 1 crystallography, and oral in vivo activity in 1-methyl-4-phenyltetrahydropyridine models., Hudkins RL, Diebold JL, Tao M, Josef KA, Park CH, Angeles TS, Aimone LD, Husten J, Ator MA, Meyer SL, Holskin BP, Durkin JT, Fedorov AA, Fedorov EV, Almo SC, Mathiasen JR, Bozyczko-Coyne D, Saporito MS, Scott RW, Mallamo JP, J Med Chem. 2008 Sep 25;51(18):5680-9. Epub 2008 Aug 21. PMID:18714982

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk] Biological Unit Coordinates (3dtc.pdb1.gz) 40 Kb LPC: Ligand-Protein Contacts for 3DTC CSU: Contacts of Structural Units for 3DTC Likely Quarternary Molecular Structure file(s) for 3DTC Structure Factors (138 Kb) Retrieve 3DTC in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3DTC from S2C, [Save to disk] Re-refined 3dtc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3DTC in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3DTC

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3DTC, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3dtc_A] [3dtc] SWISS-PROT database: [P80192] Domain organization of [M3K9_HUMAN] by SWISSPFAM Domain found in 3DTC: [TyrKc ] by SMART

Other resources with information on 3DTC

Community annotation for 3DTC at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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