3DU7	Cell Cycle	date	Jul 17, 2008
title	Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex
authors	A.Cormier, M.Marchand, R.B.Ravelli, M.Knossow, B.Gigant
compound		source
Molecule: Tubulin Alpha-1c Chain Chain: A, C Synonym: Tubulin Alpha Chain		Organism_scientific: Bos Taurus Organism_common: Bovine Organism_taxid: 9913 Organ: Brain
Molecule: Tubulin Beta-2b Chain Chain: B, D Synonym: Tubulin Beta Chain		Organism_scientific: Bos Taurus Organism_common: Bovine Organism_taxid: 9913 Organ: Brain
Molecule: Stathmin-4 Chain: E Fragment: Rb3 Stathmin-Like Domain 4 Synonym: Stathmin-Like Protein B3, Rb3 Engineered: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Rat Organism_taxid: 10116 Gene: Stmn4 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-8c
symmetry	Space Group: P 65	R_factor 0.215 R_Free 0.265
crystal cell	length a length b length c angle alpha angle beta angle gamma 327.126 327.126 53.672 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	4.10 Å
ligand	CN2, GDP, GTP, HOS, MG	enzyme
Gene Ontology	Chain Function Process Component A, C D, B E
Primary reference	Structural insight into the inhibition of tubulin by vinca domain peptide ligands., Cormier A, Marchand M, Ravelli RB, Knossow M, Gigant B, EMBO Rep. 2008 Sep 12. PMID:18787557

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (252 Kb) [Save to disk] Biological Unit Coordinates (3du7.pdb1.gz) 241 Kb LPC: Ligand-Protein Contacts for 3DU7 CSU: Contacts of Structural Units for 3DU7 Likely Quarternary Molecular Structure file(s) for 3DU7 Structure Factors (211 Kb) Retrieve 3DU7 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3DU7 from S2C, [Save to disk] Re-refined 3du7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3DU7 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3DU7

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3DU7, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3du7_E] [3du7_A] [3du7] [3du7_D] [3du7_B] [3du7_C] SWISS-PROT database: [P63043] [Q3ZCJ7] [Q6B856] Domain organization of [STMN4_RAT] [TBA1C_BOVIN] [TBB2B_BOVIN] by SWISSPFAM Domains found in 3DU7: [Tubulin] [Tubulin_C ] by SMART

Other resources with information on 3DU7

Community annotation for 3DU7 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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