3DUZ Viral Protein date Jul 18, 2008
title Crystal Structure Of The Postfusion Form Of Baculovirus Fusion Protein Gp64
authors J.Kadlec, S.Loureiro, N.G.A.Abrescia, I.M.Jones, D.I.Stuart
compound source
Molecule: Major Envelope Glycoprotein
Chain: A
Fragment: Unp Residues 21-499
Synonym: Gp67
Engineered: Yes
 Organism_scientific: Autographa Californica Nuclear Polyhedrosis Virus;
Organism_taxid: 46015
Gene: Gp67, P67
Expression_system: Spodoptera Frugiperda
Expression_system_strain: Sf9
Expression_system_vector_type: Virus
Expression_system_plasmid: Bacpak6
symmetry Space Group: H 3 2
R_factor 0.224 R_Free 0.270
crystal
cell
length a length b length c angle alpha angle beta angle gamma
87.470 87.470 431.590 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.95 Å
ligand HG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe postfusion structure of baculovirus gp64 supports a unified view of viral fusion machines., Kadlec J, Loureiro S, Abrescia NG, Stuart DI, Jones IM, Nat Struct Mol Biol. 2008 Oct;15(10):1024-30. Epub 2008 Sep 7. PMID:18776902
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (3duz.pdb1.gz) 201 Kb
  • LPC: Ligand-Protein Contacts for 3DUZ
  • CSU: Contacts of Structural Units for 3DUZ
  • Likely Quarternary Molecular Structure file(s) for 3DUZ
  • Structure Factors (171 Kb)
  • Retrieve 3DUZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DUZ from S2C, [Save to disk]
  • Re-refined 3duz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3DUZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3DUZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3DUZ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3duz_A] [3duz]
  • SWISS-PROT database: [P17501]
  • Belongs to the autographa californica nuclear polyhedrosis virus major envelope glycoprotein gp64 (gp64) family according to TCDB.
  • Domain organization of [VP67_NPVAC] by SWISSPFAM
    • Other resources with information on 3DUZ
  • Community annotation for 3DUZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science