3DWO Membrane Protein date Jul 22, 2008
title Crystal Structure Of A Pseudomonas Aeruginosa Fadl Homologue
authors E.M.Hearn, D.R.Patel, B.W.Lepore, M.Indic, B.Van Den Berg
compound source
Molecule: Probable Outer Membrane Protein
Chain: X
Fragment: Unp Residues 22-463
Engineered: Yes
Organism_scientific: Pseudomonas Aeruginosa
Organism_taxid: 287
Strain: Pao1
Gene: Pa4589
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: C43(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pbad22
symmetry Space Group: C 2 2 21
R_factor 0.213 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.777 233.054 81.899 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand C8E, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
X
  • long-chain fatty acid transp...


  • Primary referenceTransmembrane passage of hydrophobic compounds through a protein channel wall., Hearn EM, Patel DR, Lepore BW, Indic M, van den Berg B, Nature. 2009 Feb 1. PMID:19182779
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk]
  • Biological Unit Coordinates (3dwo.pdb1.gz) 75 Kb
  • LPC: Ligand-Protein Contacts for 3DWO
  • CSU: Contacts of Structural Units for 3DWO
  • Likely Quarternary Molecular Structure file(s) for 3DWO
  • Structure Factors (236 Kb)
  • Retrieve 3DWO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DWO from S2C, [Save to disk]
  • Re-refined 3dwo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3DWO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3DWO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3DWO, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3dwo] [3dwo_X]
  • SWISS-PROT database: [Q9HVJ6]
  • Domain organization of [Q9HVJ6_PSEAE] by SWISSPFAM
  • Other resources with information on 3DWO
  • Community annotation for 3DWO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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