3DYD Transferase date Jul 27, 2008
title Human Tyrosine Aminotransferase
authors T.Karlberg, M.Moche, J.Andersson, C.H.Arrowsmith, H.Berglund, R.C L.G.Dahlgren, A.M.Edwards, S.Flodin, A.Flores, S.Graslund, M.Ham A.Johansson, I.Johansson, T.Kotenyova, L.Lehtio, M.E.Nilsson, P. T.Nyman, K.Olesen, C.Persson, J.Sagemark, A.G.Thorsell, L.Tresau S.Van Den Berg, J.Weigelt, M.Welin, M.Wikstrom, M.Wisniewska, H. Structural Genomics Consortium (Sgc)
compound source
Molecule: Tyrosine Aminotransferase
Chain: A, B
Synonym: L-Tyrosine:2-Oxoglutarate Aminotransferase, Tat
Ec: 2.6.1.5
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tat
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3) R3 Prare
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic-Bsa4
symmetry Space Group: C 1 2 1
R_factor 0.219 R_Free 0.261
crystal
cell
length a length b length c angle alpha angle beta angle gamma
154.420 91.590 75.570 90.00 106.18 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand PLP enzyme Transferase E.C.2.6.1.5 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (130 Kb) [Save to disk]
  • Biological Unit Coordinates (3dyd.pdb1.gz) 124 Kb
  • LPC: Ligand-Protein Contacts for 3DYD
  • CSU: Contacts of Structural Units for 3DYD
  • Likely Quarternary Molecular Structure file(s) for 3DYD
  • Structure Factors (365 Kb)
  • Retrieve 3DYD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DYD from S2C, [Save to disk]
  • Re-refined 3dyd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3DYD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3DYD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3DYD, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3dyd] [3dyd_B] [3dyd_A]
  • SWISS-PROT database: [P17735]
  • Domain organization of [ATTY_HUMAN] by SWISSPFAM
  • Other resources with information on 3DYD
  • Community annotation for 3DYD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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