3E05 Transferase date Jul 30, 2008
title Crystal Structure Of Precorrin-6y C5,15-Methyltransferase Fr Geobacter Metallireducens Gs-15
authors Y.Patskovsky, U.A.Ramagopal, R.Toro, M.Dickey, S.Hu, M.Maletic, J. S.K.Burley, S.C.Almo, New York Sgx Research Center For Struct Genomics (Nysgxrc)
compound source
Molecule: Precorrin-6y C5,15-Methyltransferase (Decarboxyla
Chain: A, B, C, D, E, F, G, H
Fragment: C-Terminal Domain, Residues 211-405
Ec: 2.1.1.132
Engineered: Yes
Organism_scientific: Geobacter Metallireducens
Organism_taxid: 269799
Strain: Gs-15
Gene: Gmet_0481
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.216 R_Free 0.262
crystal
cell
length a length b length c angle alpha angle beta angle gamma
124.710 83.451 149.056 90.00 95.72 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand CL, GOL enzyme Transferase E.C.2.1.1.132 BRENDA
Gene GMET
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (255 Kb) [Save to disk]
  • Biological Unit Coordinates (3e05.pdb1.gz) 127 Kb
  • Biological Unit Coordinates (3e05.pdb2.gz) 126 Kb
  • LPC: Ligand-Protein Contacts for 3E05
  • CSU: Contacts of Structural Units for 3E05
  • Likely Quarternary Molecular Structure file(s) for 3E05
  • Structure Factors (3022 Kb)
  • Retrieve 3E05 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3E05 from S2C, [Save to disk]
  • Re-refined 3e05 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3E05 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3E05
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3E05, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3e05] [3e05_F] [3e05_H] [3e05_B] [3e05_E] [3e05_D] [3e05_A] [3e05_G] [3e05_C]
  • SWISS-PROT database: [Q39YF0]
  • Domain organization of [Q39YF0_GEOMG] by SWISSPFAM
  • Other resources with information on 3E05
  • Community annotation for 3E05 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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