4V65 Structure of the E. coli ribosome in the Pre-accommodation state date
authors Devkota, B., Caulfield, T.R., Tan, R.Z., Harvey, S.C.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 9.00
note 4V65 supersedes 3E1A, 3E1B
Gene
Ontology
ChainFunctionProcessComponent
AB


AC


AD


AF


AG


AH


AI
  • nuclease activity
  • endonuclease activity
  • endodeoxyribonuclease activi...


  • AJ


    AK


    AL


    AN
  • ornithine decarboxylase inhi...


  • AO


    AQ


    AR


    AS


    AT


    AU


    AV


    AW


    AX


    B1


    B2


    B3


    B4


    B5


    B6


    BC


    BD


    BE


    BF


    BG


    BH


    BI


    BJ
  • translation repressor activi...


  • BK


    BL


    BM


    BN


    BO


    BP


    BQ


    BR


    BS


    BT


    BU


    BV


    BW


    BX


    BY


    BZ


    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (991 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 4V65
  • Retrieve 4V65 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4V65 from S2C, [Save to disk]
  • View 4V65 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4V65
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4v65_BH] [4v65_BC] [4v65_B5] [4v65_AF] [4v65_BF] [4v65_BV] [4v65_BB] [4v65_AW] [4v65_B1] [4v65_AD] [4v65_BG] [4v65_AX] [4v65_AN] [4v65_BP] [4v65_AO] [4v65_AJ] [4v65_BJ] [4v65_B4] [4v65_B6] [4v65_B3] [4v65_AH] [4v65] [4v65_BR] [4v65_AT] [4v65_BQ] [4v65_AI] [4v65_A1] [4v65_BO] [4v65_AC] [4v65_BA] [4v65_BK] [4v65_AB] [4v65_BU] [4v65_BD] [4v65_BT] [4v65_BW] [4v65_BZ] [4v65_AE] [4v65_B2] [4v65_AL] [4v65_AS] [4v65_AG] [4v65_AV] [4v65_AU] [4v65_AA] [4v65_BX] [4v65_AP] [4v65_BY] [4v65_BI] [4v65_AR] [4v65_AM] [4v65_BS] [4v65_BL] [4v65_BN] [4v65_AK] [4v65_BM] [4v65_BE] [4v65_AQ]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4V65: [KH] [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART
  • Other resources with information on 4V65
  • Community annotation for 4V65 at PDBWiki (http://pdbwiki.org)

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