3E5N Ligase date Aug 14, 2008
title Crystal Structure Of D-Alanine-D-Alanine Ligase From Xanthom Oryzae Pv. Oryzae Kacc10331
authors T.N.T.Doan, J.K.Kim, H.S.Kim, Y.J.Ahn, J.G.Kim, B.M.Lee, L.W.Kang
compound source
Molecule: D-Alanine-D-Alanine Ligase A
Chain: A
Engineered: Yes
 Organism_scientific: Xanthomonas Oryzae Pv. Oryzae
Organism_taxid: 342109
Strain: Maff 311018
Gene: Xoo0324
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 43 21 2
R_factor 0.196 R_Free 0.265
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.043 83.043 97.601 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • Biological Unit Coordinates (3e5n.pdb1.gz) 107 Kb
  • CSU: Contacts of Structural Units for 3E5N
  • Structure Factors (350 Kb)
  • Retrieve 3E5N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3E5N from S2C, [Save to disk]
  • Re-refined 3e5n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3E5N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3E5N
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3E5N, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3e5n_A] [3e5n]
  • SWISS-PROT database: [Q2P8P8]
  • Domain organization of [Q2P8P8_XANOM] by SWISSPFAM
    • Other resources with information on 3E5N
  • Community annotation for 3E5N at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science