3E6G Lyase date Aug 15, 2008
title Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like Pr Xanthomonas Oryzae Pv.Oryzae
authors H.P.T.Ngo, J.K.Kim, H.S.Kim, J.H.Jung, Y.J.Ahn, J.G.Kim, B.M.Lee, H L.W.Kang
compound source
Molecule: Cystathionine Gamma-Lyase-Like Protein
Chain: A, B, C, D
Synonym: Xometc
Engineered: Yes
 Organism_scientific: Xanthomonas Oryzae Pv. Oryzae
Organism_taxid: 64187
Gene: Metb, Xoo0778
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11a
symmetry Space Group: P 41
R_factor 0.216 R_Free 0.295
crystal
cell
length a length b length c angle alpha angle beta angle gamma
78.351 78.351 300.989 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (217 Kb) [Save to disk]
  • Biological Unit Coordinates (3e6g.pdb1.gz) 210 Kb
  • CSU: Contacts of Structural Units for 3E6G
  • Structure Factors (683 Kb)
  • Retrieve 3E6G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3E6G from S2C, [Save to disk]
  • Re-refined 3e6g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3E6G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3E6G
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3E6G, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3e6g_C] [3e6g_B] [3e6g] [3e6g_A] [3e6g_D]
  • SWISS-PROT database: [Q5H4T8]
  • Domain organization of [Q5H4T8_XANOR] by SWISSPFAM
    • Other resources with information on 3E6G
  • Community annotation for 3E6G at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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