3E94	Transcription	date	Aug 21, 2008
title	Crystal Structure Of Rxralpha Ligand Binding Domain In Compl Tributyltin And A Coactivator Fragment
authors	W.Bourguet, A.Le Maire
compound		source
Molecule: Retinoic Acid Receptor Rxr-Alpha Chain: A Fragment: Ligand Binding Domain (Unp Residues 223-462) Synonym: Retinoid X Receptor Alpha, Nuclear Receptor Subfam Group B Member 1; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rxra, Nr2b1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
Molecule: Nuclear Receptor Coactivator 2 Peptide Chain: B Fragment: Nuclear Receptor Box 2 (Unp Residues 686-698) Synonym: Ncoa-2, Transcriptional Intermediary Factor 2 Engineered: Yes		Synthetic: Yes Other_details: The Peptide Was Chemically Synthesized. The Can Be Naturally Found In Homo Sapiens (Human).
symmetry	Space Group: P 43 21 2	R_factor 0.190 R_Free 0.225
crystal cell	length a length b length c angle alpha angle beta angle gamma 64.028 64.028 111.882 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	ACT, TBY	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Activation of RXR-PPAR heterodimers by organotin environmental endocrine disruptors., le Maire A, Grimaldi M, Roecklin D, Dagnino S, Vivat-Hannah V, Balaguer P, Bourguet W, EMBO Rep. 2009 Apr;10(4):367-73. Epub 2009 Mar 6. PMID:19270714

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk] Biological Unit Coordinates (3e94.pdb1.gz) 77 Kb LPC: Ligand-Protein Contacts for 3E94 CSU: Contacts of Structural Units for 3E94 Likely Quarternary Molecular Structure file(s) for 3E94 Structure Factors (844 Kb) Retrieve 3E94 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3E94 from S2C, [Save to disk] Re-refined 3e94 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3E94 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3E94

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3E94, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3e94] [3e94_B] [3e94_A] SWISS-PROT database: [Q15596] [P19793] Domain organization of [NCOA2_HUMAN] [RXRA_HUMAN] by SWISSPFAM Domain found in 3E94: [HOLI ] by SMART

Other resources with information on 3E94

Community annotation for 3E94 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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