3E9B Hydrolase date Aug 21, 2008
title X-Ray Structure Of Rat Arginase I-T135a Mutant: The Complex
authors E.Y.Shishova, L.Di Costanzo, D.W.Christianson
compound source
Molecule: Arginase-1
Chain: A, B, C
Synonym: Type I Arginase, Liver-Type Arginase
Ec: 3.5.3.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Brown Rat, Rat, Rats
Organism_taxid: 10116
Gene: Arg1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 32
R_factor 0.216 R_Free 0.274
crystal
cell
length a length b length c angle alpha angle beta angle gamma
87.505 87.505 100.696 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.15 Å
ligand MN, S2C enzyme Hydrolase E.C.3.5.3.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceProbing the specificity determinants of amino acid recognition by arginase., Shishova EY, Di Costanzo L, Emig FA, Ash DE, Christianson DW, Biochemistry. 2009 Jan 13;48(1):121-31. PMID:19093830
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (151 Kb) [Save to disk]
  • Biological Unit Coordinates (3e9b.pdb1.gz) 145 Kb
  • LPC: Ligand-Protein Contacts for 3E9B
  • CSU: Contacts of Structural Units for 3E9B
  • Likely Quarternary Molecular Structure file(s) for 3E9B
  • Structure Factors (342 Kb)
  • Retrieve 3E9B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3E9B from S2C, [Save to disk]
  • Re-refined 3e9b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3E9B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3E9B
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3E9B, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3e9b_A] [3e9b_C] [3e9b_] [3e9b_B] [3e9b]
  • SWISS-PROT database: [P07824]
  • Domain organization of [ARGI1_RAT] by SWISSPFAM
  • Other resources with information on 3E9B
  • Community annotation for 3E9B at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science