3EBV Structural Genomics, Unknown Function date Aug 28, 2008
title Crystal Structure Of Putative Chitinase A From Streptomyces Coelicolor.
authors V.Vigdorovich, U.A.Ramagopal, R.Toro, S.K.Burley, S.C.Almo, New Y Research Center For Structural Genomics (Nysgxrc)
compound source
Molecule: Chinitase A
Chain: A
Engineered: Yes
Organism_scientific: Streptomyces Coelicolor
Organism_taxid: 1902
Gene: Sco5003, Sck15.05c
Expression_system: Escherichia Coli
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Bc-Psgx4(Bc)
symmetry Space Group: H 3
R_factor 0.156 R_Free 0.169
crystal
cell
length a length b length c angle alpha angle beta angle gamma
96.636 96.636 124.735 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.50 Å
ligand MSE, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (3ebv.pdb1.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 3EBV
  • CSU: Contacts of Structural Units for 3EBV
  • Likely Quarternary Molecular Structure file(s) for 3EBV
  • Structure Factors (1061 Kb)
  • Retrieve 3EBV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3EBV from S2C, [Save to disk]
  • Re-refined 3ebv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3EBV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3EBV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3EBV, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ebv] [3ebv_A]
  • SWISS-PROT database: [Q9Z9M9]
  • Domain organization of [Q9Z9M9_STRCO] by SWISSPFAM
  • Domain found in 3EBV: [Glyco_18 ] by SMART
  • Other resources with information on 3EBV
  • Community annotation for 3EBV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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