3ED8 Application of the superfolder YFP bimolecular fluorescence complementation for studying protein-protein interactions in vitro date
authors Ottmann, C., Weyand, M.
compound source
symmetry
R_factor
R_Free 0.21774
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.70
ligand CRO enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, E, B


Primary referenceApplicability of superfolder YFP bimolecular fluorescence complementation in vitro., Ottmann C, Weyand M, Wolf A, Kuhlmann J, Ottmann C, Biol Chem. 2009 Jan;390(1):81-90. PMID:19007309
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (185 Kb) [Save to disk]
  • Biological Unit Coordinates (3ed8.pdb1.gz) 39 Kb
  • Biological Unit Coordinates (3ed8.pdb2.gz) 39 Kb
  • Biological Unit Coordinates (3ed8.pdb3.gz) 39 Kb
  • Biological Unit Coordinates (3ed8.pdb4.gz) 38 Kb
  • Biological Unit Coordinates (3ed8.pdb5.gz) 35 Kb
  • LPC: Ligand-Protein Contacts for 3ED8
  • CSU: Contacts of Structural Units for 3ED8
  • Likely Quarternary Molecular Structure file(s) for 3ED8
  • Structure Factors (419 Kb)
  • Retrieve 3ED8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ED8 from S2C, [Save to disk]
  • Re-refined 3ed8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ED8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ED8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ED8, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ed8_C] [3ed8_D] [3ed8_E] [3ed8_A] [3ed8_B] [3ed8]
  • SWISS-PROT database: [P42212]
  • Domain organization of [GFP_AEQVI] by SWISSPFAM
  • Other resources with information on 3ED8
  • Community annotation for 3ED8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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