3EER Oxidoreductase date Sep 05, 2008
title High Resolution Structure Of Putative Organic Hydroperoxide Protein From Vibrio Cholerae O1 Biovar Eltor Str. N16961
authors B.Nocek, N.Maltseva, K.Kwon, W.F.Anderson, A.Joachimiak, Center F Structural Genomics Of Infectious Diseases (Csgid)
compound source
Molecule: Organic Hydroperoxide Resistance Protein, Putativ
Chain: A
Engineered: Yes
Organism_scientific: Vibrio Cholerae O1 Biovar El Tor
Organism_taxid: 243277
Strain: N16961
Gene: Vc_a1006
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bld21(De3)
Expression_system_vector_type: Pmcsg7
symmetry Space Group: I 21 21 21
R_factor 0.139 R_Free 0.164
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.649 71.127 71.629 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.45 Å
ligand ACT, IMD, MSE, ZN enzyme
Gene VC
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk]
  • Biological Unit Coordinates (3eer.pdb1.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 3EER
  • CSU: Contacts of Structural Units for 3EER
  • Likely Quarternary Molecular Structure file(s) for 3EER
  • Structure Factors (546 Kb)
  • Retrieve 3EER in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3EER from S2C, [Save to disk]
  • Re-refined 3eer structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3EER in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3EER
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3EER, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3eer] [3eer_A]
  • SWISS-PROT database: [Q9KKU4]
  • Domain organization of [Q9KKU4_VIBCH] by SWISSPFAM
  • Other resources with information on 3EER
  • Community annotation for 3EER at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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