3EFC Membrane Protein date Sep 08, 2008
title Crystal Structure Of Yaet Periplasmic Domain
authors P.Z.Gatzeva-Topalova, T.A.Walton, M.C.Sousa
compound source
Molecule: Outer Membrane Protein Assembly Factor Yaet
Chain: A
Fragment: Periplasmic Domain (Unp Residues 21-410)
Synonym: Omp85
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Yaet, Yzzn, Yzzy, B0177, Jw0172
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta (De3)
symmetry Space Group: P 31 2 1
R_factor 0.267 R_Free 0.295
crystal
cell
length a length b length c angle alpha angle beta angle gamma
92.509 92.509 142.429 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.30 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of YaeT: conformational flexibility and substrate recognition., Gatzeva-Topalova PZ, Walton TA, Sousa MC, Structure. 2008 Dec 10;16(12):1873-81. PMID:19081063
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (3efc.pdb1.gz) 51 Kb
  • CSU: Contacts of Structural Units for 3EFC
  • Likely Quarternary Molecular Structure file(s) for 3EFC
  • Structure Factors (126 Kb)
  • Retrieve 3EFC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3EFC from S2C, [Save to disk]
  • Re-refined 3efc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3EFC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3EFC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3EFC, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3efc_A] [3efc]
  • SWISS-PROT database: [P0A940]
  • Domain organization of [YAET_ECOLI] by SWISSPFAM
  • Other resources with information on 3EFC
  • Community annotation for 3EFC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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