3EFJ Transferase date Sep 09, 2008
title Structure Of C-Met With Pyrimidone Inhibitor 7
authors N.D'Angelo, S.Bellon, D.Whittington
compound source
Molecule: Hepatocyte Growth Factor Receptor
Chain: A, B
Fragment: C-Met Kinase Domain, Unp Residues 1048-1351
Synonym: Hgf Receptor, Scatter Factor Receptor, Sf Receptor Receptor, Met Proto-Oncogene Tyrosine Kinase, C-Met;
Ec: 2.7.10.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Met
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: P 21 21 21
R_factor 0.244 R_Free 0.288
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.741 78.648 129.257 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand MT3 BindingDB enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDesign, synthesis, and biological evaluation of potent c-Met inhibitors., D'Angelo ND, Bellon SF, Booker SK, Cheng Y, Coxon A, Dominguez C, Fellows I, Hoffman D, Hungate R, Kaplan-Lefko P, Lee MR, Li C, Liu L, Rainbeau E, Reider PJ, Rex K, Siegmund A, Sun Y, Tasker AS, Xi N, Xu S, Yang Y, Zhang Y, Burgess TL, Dussault I, Kim TS, J Med Chem. 2008 Sep 25;51(18):5766-79. PMID:18763753
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk]
  • Biological Unit Coordinates (3efj.pdb1.gz) 89 Kb
  • Biological Unit Coordinates (3efj.pdb2.gz) 46 Kb
  • Biological Unit Coordinates (3efj.pdb3.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 3EFJ
  • CSU: Contacts of Structural Units for 3EFJ
  • Likely Quarternary Molecular Structure file(s) for 3EFJ
  • Structure Factors (208 Kb)
  • Retrieve 3EFJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3EFJ from S2C, [Save to disk]
  • Re-refined 3efj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3EFJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3EFJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3EFJ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3efj_B] [3efj_A] [3efj]
  • SWISS-PROT database: [P08581]
  • Domain organization of [MET_HUMAN] by SWISSPFAM
  • Domain found in 3EFJ: [TyrKc ] by SMART
  • Other resources with information on 3EFJ
  • Community annotation for 3EFJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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