3EFM Membrane Protein date Sep 09, 2008
title Structure Of The Alcaligin Outer Membrane Recepteur Faua Fro Bordetella Pertussis
authors K.Brillet, E.Lauber, C.Reimmann, S.K.Armstrong, D.Cobessi
compound source
Molecule: Ferric Alcaligin Siderophore Receptor
Chain: A
Fragment: Unp Residues 36-734
Synonym: Faua
Engineered: Yes
 Organism_scientific: Bordetella Pertussis
Organism_taxid: 520
Gene: Faua, Bp2463
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 2 2 21
R_factor 0.219 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
165.893 188.847 62.437 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.33 Å
ligand SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceUse of an in-house approach to study the three-dimensional structures of various outer membrane proteins: structure of the alcaligin outer membrane transporter FauA from Bordetella pertussis., Brillet K, Meksem A, Lauber E, Reimmann C, Cobessi D, Acta Crystallogr D Biol Crystallogr. 2009 Apr;65(Pt 4):326-31. Epub 2009 Mar 19. PMID:19307713
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (96 Kb) [Save to disk]
  • Biological Unit Coordinates (3efm.pdb1.gz) 90 Kb
  • LPC: Ligand-Protein Contacts for 3EFM
  • CSU: Contacts of Structural Units for 3EFM
  • Likely Quarternary Molecular Structure file(s) for 3EFM
  • Structure Factors (322 Kb)
  • Retrieve 3EFM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3EFM from S2C, [Save to disk]
  • Re-refined 3efm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3EFM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3EFM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3EFM, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3efm] [3efm_A]
  • SWISS-PROT database: [Q9X6A5]
  • Domain organization of [Q9X6A5_BORPE] by SWISSPFAM
    • Other resources with information on 3EFM
  • Community annotation for 3EFM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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