3EGC Structural Genomics, Unknown Function date Sep 10, 2008
title Crystal Structure Of A Putative Ribose Operon Repressor From Burkholderia Thailandensis
authors J.B.Bonanno, Y.Patskovsky, M.Gilmore, K.T.Bain, S.Hu, R.Romero, S.Wasserman, J.M.Sauder, S.K.Burley, S.C.Almo, New York Sgx Res Center For Structural Genomics (Nysgxrc)
compound source
Molecule: Putative Ribose Operon Repressor
Chain: A, B, C, D, E, F
Engineered: Yes
 Organism_scientific: Burkholderia Thailandensis
Organism_taxid: 271848
Strain: E264
Gene: Bth_i0812
Expression_system: Escherichia Coli
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Modified Pet26
symmetry Space Group: P 1 21 1
R_factor 0.257 R_Free 0.299
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.712 288.651 63.355 90.00 113.59 90.00
method X-Ray Diffractionresolution 2.35 Å
Gene BTH
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (247 Kb) [Save to disk]
  • Biological Unit Coordinates (3egc.pdb1.gz) 82 Kb
  • Biological Unit Coordinates (3egc.pdb2.gz) 83 Kb
  • Biological Unit Coordinates (3egc.pdb3.gz) 82 Kb
  • CSU: Contacts of Structural Units for 3EGC
  • Likely Quarternary Molecular Structure file(s) for 3EGC
  • Structure Factors (3248 Kb)
  • Retrieve 3EGC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3EGC from S2C, [Save to disk]
  • Re-refined 3egc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3EGC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3EGC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3EGC, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3egc_A] [3egc_E] [3egc_D] [3egc_C] [3egc] [3egc_F] [3egc_B]
  • SWISS-PROT database: [Q2T0D1]
  • Domain organization of [Q2T0D1_BURTA] by SWISSPFAM
    • Other resources with information on 3EGC
  • Community annotation for 3EGC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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