3ELY Transferase date Sep 23, 2008
title Wesselsbron Virus Methyltransferase In Complex With Adohcy
authors M.Bollati, M.Milani, S.Ricagno, E.Mastrangelo, M.Bolognesi
compound source
Molecule: Methyltransferase
Chain: A
Fragment: Ns5 N-Terminal Methyltransferase Domain, Unp Resi 2791;
Ec: 2.1.1.57
Engineered: Yes
Organism_scientific: Wesselsbron Virus
Organism_taxid: 164416
Strain: Sah-177 99871-2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: C41 (De3) Pros
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pdest14
symmetry Space Group: P 21 21 21
R_factor 0.187 R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.715 66.436 91.055 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand PEG, SAH, SO4 enzyme Transferase E.C.2.1.1.57 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • mRNA (guanine-N7-)-methyltra...
  • mRNA (nucleoside-2'-O-)-meth...


  • Primary referenceRecognition of RNA Cap in the Wesselsbron Virus NS5 Methyltransferase Domain: Implications for RNA-Capping Mechanisms in Flavivirus., Bollati M, Milani M, Mastrangelo E, Ricagno S, Tedeschi G, Nonnis S, Decroly E, Selisko B, de Lamballerie X, Coutard B, Canard B, Bolognesi M, J Mol Biol. 2008 Oct 19. PMID:18976670
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (3ely.pdb1.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 3ELY
  • CSU: Contacts of Structural Units for 3ELY
  • Likely Quarternary Molecular Structure file(s) for 3ELY
  • Structure Factors (607 Kb)
  • Retrieve 3ELY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ELY from S2C, [Save to disk]
  • Re-refined 3ely structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
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  • Visual 3D analysis of 3ELY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ELY, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ely_A] [3ely]
  • SWISS-PROT database: [D0VX01]
  • Domain organization of [D0VX01_9FLAV] by SWISSPFAM
  • Other resources with information on 3ELY
  • Community annotation for 3ELY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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