3ELZ	Lipid Binding Protein	date	Sep 23, 2008
title	Crystal Structure Of Zebrafish Ileal Bile Acid-Bindin Protei Complexed With Cholic Acid (Crystal Form A).
authors	S.Capaldi, G.Saccomani, D.Fessas, M.Signorelli, M.Perduca, H.L.Mo
compound		source
Molecule: Ileal Bile Acid-Binding Protein Chain: A, B, C Synonym: Fatty Acid Binding Protein 6, Ileal (Gastrotropin) Engineered: Yes		Organism_scientific: Danio Rerio Organism_common: Leopard Danio,Zebra Danio,Zebra Fish Organism_taxid: 7955 Gene: Fabp6, Zgc:92421 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Sg13009 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pqe50
symmetry	Space Group: C 1 2 1	R_factor 0.222 R_Free 0.264
crystal cell	length a length b length c angle alpha angle beta angle gamma 149.195 80.290 39.723 90.00 96.12 90.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	CHD	enzyme
Gene Ontology	Chain Function Process Component A, C, B
Primary reference	The X-Ray structure of zebrafish (Danio rerio) ileal bile acid-binding protein reveals the presence of binding sites on the surface of the protein molecule., Capaldi S, Saccomani G, Fessas D, Signorelli M, Perduca M, Monaco HL, J Mol Biol. 2009 Jan 9;385(1):99-116. Epub 2008 Oct 14. PMID:18952094

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (77 Kb) [Save to disk] Biological Unit Coordinates (3elz.pdb1.gz) 25 Kb Biological Unit Coordinates (3elz.pdb2.gz) 25 Kb Biological Unit Coordinates (3elz.pdb3.gz) 24 Kb LPC: Ligand-Protein Contacts for 3ELZ CSU: Contacts of Structural Units for 3ELZ Likely Quarternary Molecular Structure file(s) for 3ELZ Structure Factors (476 Kb) Retrieve 3ELZ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3ELZ from S2C, [Save to disk] Re-refined 3elz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3ELZ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3ELZ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3ELZ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3elz_A] [3elz] [3elz_C] [3elz_B] SWISS-PROT database: [Q6IMW5] Domain organization of [Q6IMW5_DANRE] by SWISSPFAM

Other resources with information on 3ELZ

Community annotation for 3ELZ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---