3EMG	Transferase	date	Sep 24, 2008
title	Discovery And Sar Of Novel 4-Thiazolyl-2-Phenylaminopyrimidi Potent Inhibitors Of Spleen Tyrosine Kinase (Syk)
authors	E.Ter Haar
compound		source
Molecule: Tyrosine-Protein Kinase Syk Chain: A Fragment: Kinase Domain: Residues 349-635 Synonym: Spleen Tyrosine Kinase Ec: 2.7.10.2 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Gene: Syk Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108 Expression_system_strain: High-5 Expression_system_cell: Insect Cells Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pbev10 Topo
symmetry	Space Group: P 1 21 1	R_factor 0.200 R_Free 0.222
crystal cell	length a length b length c angle alpha angle beta angle gamma 39.870 84.450 41.440 90.00 99.63 90.00
method	X-Ray Diffraction	resolution	2.60 Å
ligand	685 BindingDB	enzyme	Transferase E.C.2.7.10.2 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Discovery and SAR of novel 4-thiazolyl-2-phenylaminopyrimidines as potent inhibitors of spleen tyrosine kinase (SYK)., Farmer LJ, Bemis G, Britt SD, Cochran J, Connors M, Harrington EM, Hoock T, Markland W, Nanthakumar S, Taslimi P, Ter Haar E, Wang J, Zhaveri D, Salituro FG, Bioorg Med Chem Lett. 2008 Dec 1;18(23):6231-5. Epub 2008 Oct 7. PMID:18938080

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk] Biological Unit Coordinates (3emg.pdb1.gz) 41 Kb LPC: Ligand-Protein Contacts for 3EMG CSU: Contacts of Structural Units for 3EMG Likely Quarternary Molecular Structure file(s) for 3EMG Structure Factors (66 Kb) Retrieve 3EMG in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3EMG from S2C, [Save to disk] Re-refined 3emg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3EMG in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3EMG

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3EMG, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3emg_] [3emg] [3emg_A] SWISS-PROT database: [P43405] Domain organization of [KSYK_HUMAN] by SWISSPFAM Domain found in 3EMG: [TyrKc ] by SMART

Other resources with information on 3EMG

Community annotation for 3EMG at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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