3EO1	Immune System Cytokine	date	Sep 26, 2008
title	Structure Of The Fab Fragment Of Gc-1008 In Complex With Tra Growth Factor-Beta 3
authors	C.Gruetter, M.G.Gruetter
compound		source
Molecule: Gc-1008 Fab Light Chain Chain: A, D, G, J Engineered: Yes		Organism_scientific: Mus Musculus Organism_taxid: 10090 Expression_system: Mus Musculus Expression_system_taxid: 10090 Expression_system_strain: Ns0
Molecule: Gc-1008 Fab Heavy Chain Chain: B, E, H, K Engineered: Yes		Organism_scientific: Mus Musculus Organism_taxid: 10090 Expression_system: Mus Musculus Expression_system_taxid: 10090 Expression_system_strain: Ns0
Molecule: Transforming Growth Factor Beta-3 Chain: C, F, I, L Fragment: Unp Residues 301-412, Receptor Binding Fragment Synonym: Tgf-Beta-3 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Tgfb3 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.255 R_Free 0.279
crystal cell	length a length b length c angle alpha angle beta angle gamma 149.040 149.130 149.660 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.10 Å
Gene Ontology	Chain Function Process Component F, C, I, L
Primary reference	A cytokine-neutralizing antibody as a structural mimetic of 2 receptor interactions., Grutter C, Wilkinson T, Turner R, Podichetty S, Finch D, McCourt M, Loning S, Jermutus L, Grutter MG, Proc Natl Acad Sci U S A. 2008 Dec 23;105(51):20251-6. Epub 2008 Dec 10. PMID:19073914

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (315 Kb) [Save to disk] Biological Unit Coordinates (3eo1.pdb1.gz) 158 Kb Biological Unit Coordinates (3eo1.pdb2.gz) 158 Kb CSU: Contacts of Structural Units for 3EO1 Likely Quarternary Molecular Structure file(s) for 3EO1 Structure Factors (536 Kb) Retrieve 3EO1 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3EO1 from S2C, [Save to disk] Re-refined 3eo1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3EO1 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3EO1

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3EO1, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3eo1_H] [3eo1_I] [3eo1_F] [3eo1_K] [3eo1_G] [3eo1] [3eo1_A] [3eo1_C] [3eo1_J] [3eo1_D] [3eo1_L] [3eo1_E] [3eo1_B] [3eo1_] SWISS-PROT database: [P10600] Domain organization of [TGFB3_HUMAN] by SWISSPFAM Domains found in 3EO1: [IG_like] [IGv] [TGFB ] by SMART

Other resources with information on 3EO1

Community annotation for 3EO1 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---