3EOX Blood Clotting date Sep 29, 2008
title High Quality Structure Of Cleaved Pai-1-Stab
authors M.Dewilde, P.J.Declerck, A.Rabijns, S.V.Strelkov
compound source
Molecule: Plasminogen Activator Inhibitor 1
Chain: A
Fragment: Pai-1
Synonym: Pai-1, Pai, Endothelial Plasminogen Activator Inhi
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Serpine1, Pai1, Planh1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Mc1061
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pige20
symmetry Space Group: P 31 1 2
R_factor 0.201 R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.174 71.174 141.664 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.61 Å
Gene
Ontology
ChainFunctionProcessComponent
A
  • negative regulation of endop...
  • negative regulation of smoot...

  • Primary referenceHigh quality structure of cleaved PAI-1-stab., Dewilde M, Strelkov SV, Rabijns A, Declerck PJ, J Struct Biol. 2009 Feb;165(2):126-32. Epub 2008 Nov 27. PMID:19059484
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (3eox.pdb1.gz) 60 Kb
  • CSU: Contacts of Structural Units for 3EOX
  • Likely Quarternary Molecular Structure file(s) for 3EOX
  • Structure Factors (185 Kb)
  • Retrieve 3EOX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3EOX from S2C, [Save to disk]
  • Re-refined 3eox structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3EOX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3EOX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3EOX, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3eox_A] [3eox]
  • SWISS-PROT database: [P05121]
  • Domain organization of [PAI1_HUMAN] by SWISSPFAM
  • Domain found in 3EOX: [SERPIN ] by SMART
  • Other resources with information on 3EOX
  • Community annotation for 3EOX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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