3ERZ Oxidoreductase date Oct 03, 2008
title Directing Noble Metal Ion Chemistry Within A Designed Ferrit Protein. Mercury Ions On The Three-Fold Channel
authors L.Di Costanzo, D.W.Christianson
compound source
Molecule: Ferritin Heavy Chain
Chain: A, B, C, D, E, F, G, H, I, J, K, L
Synonym: Ferritin H Subunit, Cell Proliferation-Inducing Ge Protein;
Ec: 1.16.3.1
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 4 21 2
R_factor 0.199 R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
170.941 170.941 190.144 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.06 Å
ligand CA, HG, MPD, ZN enzyme Oxidoreductase E.C.1.16.3.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, K, E, B, H, C, D, I, G, L


Primary referenceDirecting noble metal ion chemistry within a designed ferritin protein., Butts CA, Swift J, Kang SG, Di Costanzo L, Christianson DW, Saven JG, Dmochowski IJ, Biochemistry. 2008 Dec 2;47(48):12729-39. PMID:18991401
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (344 Kb) [Save to disk]
  • Biological Unit Coordinates (3erz.pdb1.gz) 669 Kb
  • Biological Unit Coordinates (3erz.pdb2.gz) 672 Kb
  • LPC: Ligand-Protein Contacts for 3ERZ
  • CSU: Contacts of Structural Units for 3ERZ
  • Likely Quarternary Molecular Structure file(s) for 3ERZ
  • Structure Factors (427 Kb)
  • Retrieve 3ERZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ERZ from S2C, [Save to disk]
  • Re-refined 3erz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ERZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ERZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ERZ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3erz_H] [3erz_E] [3erz_F] [3erz_C] [3erz_L] [3erz] [3erz_J] [3erz_D] [3erz_G] [3erz_B] [3erz_I] [3erz_A] [3erz_K]
  • SWISS-PROT database: [P02794]
  • Domain organization of [FRIH_HUMAN] by SWISSPFAM
  • Other resources with information on 3ERZ
  • Community annotation for 3ERZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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