3ET2 Transcription date Oct 06, 2008
title Structure Of Ppardelta With 3-[5-Methoxy-1-(4-Methoxy- Benzenesulfonyl)-1h-Indol-3-Yl]-Propionic Acid
authors K.Y.J.Zhang, W.Wang
compound source
Molecule: Peroxisome Proliferator-Activated Receptor Delta
Chain: A, B
Fragment: Ligand Binding Domain
Synonym: Ppar-Delta, Ppar- Beta, Nuclear Receptor Subfamily Member 2, Nuclear Hormone Receptor 1, Nuc1, Nuci;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ppard, Nr1c2, Pparb
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-28
symmetry Space Group: P 1 21 1
R_factor 0.185 R_Free 0.242
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.402 94.353 97.183 90.00 98.27 90.00
method X-Ray Diffractionresolution 2.24 Å
ligand 1BO, ET1 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceScaffold-based discovery of indeglitazar, a PPAR pan-active anti-diabetic agent., Artis DR, Lin JJ, Zhang C, Wang W, Mehra U, Perreault M, Erbe D, Krupka HI, England BP, Arnold J, Plotnikov AN, Marimuthu A, Nguyen H, Will S, Signaevsky M, Kral J, Cantwell J, Settachatgull C, Yan DS, Fong D, Oh A, Shi S, Womack P, Powell B, Habets G, West BL, Zhang KY, Milburn MV, Vlasuk GP, Hirth KP, Nolop K, Bollag G, Ibrahim PN, Tobin JF, Proc Natl Acad Sci U S A. 2009 Jan 6;106(1):262-7. Epub 2008 Dec 30. PMID:19116277
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (102 Kb) [Save to disk]
  • Biological Unit Coordinates (3et2.pdb1.gz) 50 Kb
  • Biological Unit Coordinates (3et2.pdb2.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 3ET2
  • CSU: Contacts of Structural Units for 3ET2
  • Likely Quarternary Molecular Structure file(s) for 3ET2
  • Structure Factors (248 Kb)
  • Retrieve 3ET2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ET2 from S2C, [Save to disk]
  • Re-refined 3et2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ET2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ET2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ET2, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3et2] [3et2_B] [3et2_A]
  • SWISS-PROT database: [Q03181]
  • Domain organization of [PPARD_HUMAN] by SWISSPFAM
  • Domain found in 3ET2: [HOLI ] by SMART
  • Other resources with information on 3ET2
  • Community annotation for 3ET2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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