3ETW Cell Adhesion date Oct 08, 2008
title Crystal Structure Of Bacterial Adhesin Fada
authors S.Nithianantham, M.Xu, N.Wu, M.Shoham, Y.W.Han
compound source
Molecule: Adhesin A
Chain: A
Engineered: Yes
Organism_scientific: Fusobacterium Nucleatum
Organism_taxid: 851
Gene: Fada
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21(B)
symmetry Space Group: P 61
R_factor 0.225 R_Free 0.254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.340 59.340 126.374 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
ligand SCN enzyme
note 3ETW supersedes 2AVR
Primary referenceCrystal structure of FadA adhesin from fusobacterium nucleatum reveals a novel oligomerization motif: The leucine chain., Nithianantham S, Xu M, Yamada M, Ikegami A, Shoham M, Han YW, J Biol Chem. 2008 Nov 7. PMID:18996848
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (25 Kb) [Save to disk]
  • Biological Unit Coordinates (3etw.pdb1.gz) 21 Kb
  • LPC: Ligand-Protein Contacts for 3ETW
  • CSU: Contacts of Structural Units for 3ETW
  • Likely Quarternary Molecular Structure file(s) for 3ETW
  • Structure Factors (117 Kb)
  • Retrieve 3ETW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ETW from S2C, [Save to disk]
  • Re-refined 3etw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ETW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ETW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ETW, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3etw] [3etw_A] [3etw_]
  • SWISS-PROT database: [Q5I6B0]
  • Domain organization of [Q5I6B0_FUSNU] by SWISSPFAM
  • Other resources with information on 3ETW
  • Community annotation for 3ETW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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