3EU0 Hydrolase date Oct 09, 2008
title Crystal Structure Of The S-Nitrosylated Cys215 Of Ptp1b
authors H.M.Chu, A.H.J.Wang, Y.Y.Chen, K.T.Pan, D.L.Wang, K.H.Khoo, T.C.Me
compound source
Molecule: Tyrosine-Protein Phosphatase Non-Receptor Type 1
Chain: A
Fragment: C-Termical Ptp1b, Unp Residues 1-282
Synonym: Protein-Tyrosine Phosphatase 1b, Ptp-1b
Ec: 3.1.3.48
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ptpn1, Ptp1b
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet19b
symmetry Space Group: P 31 2 1
R_factor 0.202 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.720 88.720 104.720 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.70 Å
ligand SNC enzyme Hydrolase E.C.3.1.3.48 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCysteine S-nitrosylation protects protein tyrosine phosphatase 1B against oxidation-induced permanent inactivation., Chen YY, Chu HM, Pan KT, Teng CH, Wang DL, Wang AH, Khoo KH, Meng TC, J Biol Chem. 2008 Oct 7. PMID:18840608
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (3eu0.pdb1.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 3EU0
  • CSU: Contacts of Structural Units for 3EU0
  • Likely Quarternary Molecular Structure file(s) for 3EU0
  • Structure Factors (147 Kb)
  • Retrieve 3EU0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3EU0 from S2C, [Save to disk]
  • Re-refined 3eu0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3EU0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3EU0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3EU0, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3eu0] [3eu0_A]
  • SWISS-PROT database: [P18031]
  • Domain organization of [PTN1_HUMAN] by SWISSPFAM
  • Domains found in 3EU0: [PTPc] [PTPc_DSPc ] by SMART
  • Other resources with information on 3EU0
  • Community annotation for 3EU0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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